SNP Profiles of LCT EEN 163/D View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AC	GG	TT	AA	CC	CC	AG	CC	AA	AG	TT	CC	GG
1._LCT_EEN_163_/D	_	AC	GG	TT	_	CC	-	AG	CC	_	_	TT	_	GG
2._RUQ_180	_	AC	_	_	_	_	_	AG	_	AA	_	_	_	_
3._RUQ_180	CC	AC	CC	AA	AA	CC	GG	AG	GG	AA	AG	TT	CG	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	GG	GG	CC	CC	TT	CC	TT	AA	TT	CC	CC	CC
1._LCT_EEN_163_/D	AA	CC	GG	GG	CC	_	TT	_	TT	_	_	_	CC	CC
2._RUQ_180	AA	_	_	GG	CC	CC	_	CC	TT	AA	_	CC	CC	_
3._RUQ_180	AA	_	CC	GG	CC	GG	AA	_	AA	AA	AA	CC	GG	_

	29	30	31	32	33	34	35	36	37	38	39	40	41
_Input profile	TT	AA	CC	CC	GG	GG	TT	GG	CT	CC	TT	CC	GG	X_X
1._LCT_EEN_163_/D	TT	AA	_	CC	_	_	_	GG	_	_	TT	CC	GG	X_X
2._RUQ_180	_	AA	CC	_	_	_	_	GG	_	_	_	CC	_	X_X
3._RUQ_180	AA	AA	_	GG	CC	GG	_	_	AG	GG	AA	GG	GG	X_X

Input profile: LCT_EEN_163_/D RUQ_180

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._LCT_EEN_163_/D

identical
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 104 T1

Dapeng Zhang, 2014

2._LCT_EEN_163_/D RUQ_180

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

3._LCT_EEN_163_/D RUQ_180

48.5 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP90	2	TcSNP144	3	TcSNP150	4	TcSNP151	5	TcSNP174
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP329
11	TcSNP364	12	TcSNP372	13	TcSNP448	14	TcSNP469	15	TcSNP529
16	TcSNP534	17	TcSNP560	18	TcSNP577	19	TcSNP591	20	TcSNP602
21	TcSNP619	22	TcSNP702	23	TcSNP723	24	TcSNP731	25	TcSNP799
26	TcSNP823	27	TcSNP872	28	TcSNP878	29	TcSNP891	30	TcSNP998
31	TcSNP999	32	TcSNP1060	33	TcSNP1063	34	TcSNP1111	35	TcSNP1126
36	TcSNP1253	37	TcSNP1309	38	TcSNP1439	39	TcSNP1442	40	TcSNP1458
41	TcSNP1484